In the hybrid Molecular Dynamics (MD)/Brownian Dynamics (BD) algorithm for simulating the long-time, nonequilibrium dynamics of receptor-ligand interactions, the evaluation of the force autocorrelation function can be computationally costly but fortunately is highly amenable to multimode processing methods. In this paper, taking advantage of the computational grid
Citation:
Yaohang Li, Michael Mascagni, Michael H. Peters, "Grid-based Nonequilibrium Multiple-Time Scale Molecular Dynamics/Brownian Dynamics Simulations of Ligand-Receptor Interactions in Structured Protein Systems," ccgrid, pp.568, Third IEEE International Symposium on Cluster Computing and the Grid (CCGrid'03), 2003