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Parallel Sequence Comparison and Alignment
Strasbourg, France July 24-July 26
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/ASAP.1995.5229161995 IEEE International Conference on ...
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Richard Hughey, "Parallel Sequence Comparison and Alignment," Application-Specific Systems, Architectures and Processors, IEEE International Conference on, pp. 137, 1995 IEEE International Conference on Application-Specific Array Processors (ASAP'95), 1995.
 
 
BibTex
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@article{ 10.1109/ASAP.1995.522916,
author = {Richard Hughey},
title = {Parallel Sequence Comparison and Alignment},
journal ={Application-Specific Systems, Architectures and Processors, IEEE International Conference on},
volume = {0},
year = {1995},
issn = {1063-6862},
pages = {137},
doi = {http://doi.ieeecomputersociety.org/10.1109/ASAP.1995.522916},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
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TY - CONF
JO - Application-Specific Systems, Architectures and Processors, IEEE International Conference on
TI - Parallel Sequence Comparison and Alignment
SN - 1063-6862
SP
EP
A1 - Richard Hughey,
PY - 1995
KW - Sequence comparison
KW - alignment
KW - special-purpose systolic arrays
KW - parallel architecture
KW - performance analysis
VL - 0
JA - Application-Specific Systems, Architectures and Processors, IEEE International Conference on
ER -
 
Richard Hughey, University of California, Santa Cruz (UCSC)
Sequence comparison, a vital research tool in computational biology, is based on a simple O(n**2) algorithm that easily maps to a linear array of processors. This paper reviews and compares high-performance sequence analysis on general-purpose supercomputers and single-purpose, reconfigurable, and programmable co-processors. The difficulty of comparing hardware from published performance figures is also noted.
Index Terms:
Sequence comparison, alignment, special-purpose systolic arrays, parallel architecture, performance analysis
Citation:
Richard Hughey, "Parallel Sequence Comparison and Alignment," asap, pp.137, 1995 IEEE International Conference on Application-Specific Array Processors (ASAP'95), 1995
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