A new dynamical domain decomposition method for parallel molecular dynamics simulation

Cardiff, Wales, UK May 09-May 12

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http://doi.ieeecomputersociety.org/10.1109/CCGRID.2005.1558650

Fifth IEEE International Symposium on ...

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	V. Zhakhovskii, K. Nishihara, Y. Fukuda, S. Shimojo, T. Akiyama, S. Miyanaga, H. Sone, H. Kobayashi, E. Ito, Y. Seo, M. Tamura, Y. Ueshima, "A new dynamical domain decomposition method for parallel molecular dynamics simulation," Cluster Computing and the Grid, IEEE International Symposium on, vol. 2, pp. 848-854, Fifth IEEE International Symposium on Cluster Computing and the Grid (CCGrid'05) - Volume 2, 2005.

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	@article{ 10.1109/CCGRID.2005.1558650, author = {V. Zhakhovskii and K. Nishihara and Y. Fukuda and S. Shimojo and T. Akiyama and S. Miyanaga and H. Sone and H. Kobayashi and E. Ito and Y. Seo and M. Tamura and Y. Ueshima}, title = {A new dynamical domain decomposition method for parallel molecular dynamics simulation}, journal ={Cluster Computing and the Grid, IEEE International Symposium on}, volume = {2}, year = {2005}, isbn = {0-7803-9074-1}, pages = {848-854}, doi = {http://doi.ieeecomputersociety.org/10.1109/CCGRID.2005.1558650}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, }

	RefWorks Procite/RefMan/Endnote	x
	TY - CONF JO - Cluster Computing and the Grid, IEEE International Symposium on TI - A new dynamical domain decomposition method for parallel molecular dynamics simulation SN - 0-7803-9074-1 SP848 EP854 A1 - V. Zhakhovskii, A1 - K. Nishihara, A1 - Y. Fukuda, A1 - S. Shimojo, A1 - T. Akiyama, A1 - S. Miyanaga, A1 - H. Sone, A1 - H. Kobayashi, A1 - E. Ito, A1 - Y. Seo, A1 - M. Tamura, A1 - Y. Ueshima, PY - 2005 VL - 2 JA - Cluster Computing and the Grid, IEEE International Symposium on ER -

V. Zhakhovskii, Inst. of Laser Eng., Osaka Univ., Japan

K. Nishihara, Inst. of Laser Eng., Osaka Univ., Japan

Y. Fukuda, Inst. of Laser Eng., Osaka Univ., Japan

S. Shimojo, Lab. ID, IMAG, Grenoble, France

T. Akiyama, Lab. ID, IMAG, Grenoble, France

S. Miyanaga, Lab. ID, IMAG, Grenoble, France

H. Sone, Lab. ID, IMAG, Grenoble, France

H. Kobayashi, Lab. ID, IMAG, Grenoble, France

E. Ito, Software Eng. & Technol. Labs., Infosys Technol., Bangalore, India

Y. Seo

M. Tamura

Y. Ueshima

A new material particle dynamical domain decomposition method MPD/sup 3/ has been developed. The method is suitable for a large scale parallel molecular dynamic simulation on a heterogeneous computing net. Performance of the MPD/sup 3/ algorithm is tested in various computing environments, such as PC clusters, super computer clusters, and grid. It is shown that the MPD/sup 3/ algorithm is highly-adaptive for both computer clusters and grid computing environments, even if other programs are running on the same computer environment.

Citation:

V. Zhakhovskii, K. Nishihara, Y. Fukuda, S. Shimojo, T. Akiyama, S. Miyanaga, H. Sone, H. Kobayashi, E. Ito, Y. Seo, M. Tamura, Y. Ueshima, "A new dynamical domain decomposition method for parallel molecular dynamics simulation," ccgrid, vol. 2, pp.848-854, Fifth IEEE International Symposium on Cluster Computing and the Grid (CCGrid'05) - Volume 2, 2005

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