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A grid-based system for microbial genome comparison and analysis
Cardiff, Wales, UK May 09-May 12
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/CCGRID.2005.1558667Fifth IEEE International Symposium on ...
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Y. Sun, Anil Wipat, M. Pocock, P.A. Lee, P. Watson, K. Flanagan, J.T. Worthington, "A grid-based system for microbial genome comparison and analysis," Cluster Computing and the Grid, IEEE International Symposium on, vol. 2, pp. 977-984, Fifth IEEE International Symposium on Cluster Computing and the Grid (CCGrid'05) - Volume 2, 2005.
 
 
BibTex
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@article{ 10.1109/CCGRID.2005.1558667,
author = {Y. Sun and Anil Wipat and M. Pocock and P.A. Lee and P. Watson and K. Flanagan and J.T. Worthington},
title = {A grid-based system for microbial genome comparison and analysis},
journal ={Cluster Computing and the Grid, IEEE International Symposium on},
volume = {2},
year = {2005},
isbn = {0-7803-9074-1},
pages = {977-984},
doi = {http://doi.ieeecomputersociety.org/10.1109/CCGRID.2005.1558667},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
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TY - CONF
JO - Cluster Computing and the Grid, IEEE International Symposium on
TI - A grid-based system for microbial genome comparison and analysis
SN - 0-7803-9074-1
SP977
EP984
A1 - Y. Sun,
A1 - Anil Wipat,
A1 - M. Pocock,
A1 - P.A. Lee,
A1 - P. Watson,
A1 - K. Flanagan,
A1 - J.T. Worthington,
PY - 2005
VL - 2
JA - Cluster Computing and the Grid, IEEE International Symposium on
ER -
 
Y. Sun, Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK
Anil Wipat, Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK
M. Pocock, Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK
P.A. Lee, Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK
P. Watson, Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK
K. Flanagan, Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK
J.T. Worthington, Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK
Genome comparison and analysis can reveal the structures and junctions of genome sequences of different species. As more genomes are sequenced, genomic data sources are rapidly increasing such that their analysis is beyond the processing capabilities of most research institutes. The grid is a powerful solution to support large-scale genomic data processing and genome analysis. This paper presents the Microbase project that is developing a grid-based system for genome comparison and analysis, and discusses the first implementation of the system (called MicrobaseLite). MicrobaseLite uses a scalable computing environment to support computationally intensive microbial genome comparison and analysis, employing state-of-the-art technologies of Web services, notification, comparative genomics and parallel computing. Microbase will support not only system-defined genome comparison and analysis but also user-defined, remotely conceived genome analysis.
Citation:
Y. Sun, Anil Wipat, M. Pocock, P.A. Lee, P. Watson, K. Flanagan, J.T. Worthington, "A grid-based system for microbial genome comparison and analysis," ccgrid, vol. 2, pp.977-984, Fifth IEEE International Symposium on Cluster Computing and the Grid (CCGrid'05) - Volume 2, 2005
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