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Structure induction by lossless graph compression
Snowbird, Utah March 27-March 29
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/DCC.2007.732007 Data Compression Conference (DCC ...
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Leonid Peshkin, Harvard Medical School
This work is motivated by the necessity to automate the discovery of structure in vast and evergrowing collection of relational data commonly represented as graphs, for example genomic networks. A novel algorithm, dubbed Graphitour, for structure induction by lossless graph compression is presented and illustrated by a clear and broadly known case of nested structure in a DNA molecule. This work extends to graphs some well established approaches to grammatical inference previously applied only to strings. The bottom-up graph compression problem is related to the maximum cardinality (non-bipartite) maximum cardinality matching problem. The algorithm accepts a variety of graph types including directed graphs and graphs with labeled nodes and arcs. The resulting structure could be used for representation and classification of graphs.
Citation:
Leonid Peshkin, "Structure induction by lossless graph compression," dcc, pp.53-62, 2007 Data Compression Conference (DCC'07), 2007
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