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Development of User-friendly Supercomputing Portal in Bio Research Field
Melbourne, Australia December 05-December 08
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/E-SCIENCE.2005.32First International Conference on e-S ...
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Hiroaki Yuasa, Takeshi Iwasaki, Motoyoshi Kurokawa, Takayuki Shigetani, Tsuyoshi Horiki, Ryutaro Himeno, "Development of User-friendly Supercomputing Portal in Bio Research Field," e-Science and Grid Computing, International Conference on, pp. 508-515, First International Conference on e-Science and Grid Computing (e-Science'05), 2005.
 
 
BibTex
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@article{ 10.1109/E-SCIENCE.2005.32,
author = {Hiroaki Yuasa and Takeshi Iwasaki and Motoyoshi Kurokawa and Takayuki Shigetani and Tsuyoshi Horiki and Ryutaro Himeno},
title = {Development of User-friendly Supercomputing Portal in Bio Research Field},
journal ={e-Science and Grid Computing, International Conference on},
volume = {0},
year = {2005},
isbn = {0-7695-2448-6},
pages = {508-515},
doi = {http://doi.ieeecomputersociety.org/10.1109/E-SCIENCE.2005.32},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
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TY - CONF
JO - e-Science and Grid Computing, International Conference on
TI - Development of User-friendly Supercomputing Portal in Bio Research Field
SN - 0-7695-2448-6
SP508
EP515
A1 - Hiroaki Yuasa,
A1 - Takeshi Iwasaki,
A1 - Motoyoshi Kurokawa,
A1 - Takayuki Shigetani,
A1 - Tsuyoshi Horiki,
A1 - Ryutaro Himeno,
PY - 2005
KW - null
VL - 0
JA - e-Science and Grid Computing, International Conference on
ER -
 
The RIKEN Super Combined Cluster (RSCC) System in RIKEN Wako Inst., started its operation in March, 2004. A web portal system called Bio Portal was developed to utilize a Linux cluster (a part of RSCC) for data analysis in the life sciences. A small SMP server was then placed in RIKEN Yokohama Inst. for small analysis, and the Bio Portal integrates both RSCC and this SMP server through the application of Grid technology. The aim of this portal system was to construct a simple data analysis environment for experimental researchers, and to improve performance of data analysis through the use of two differently performing computing resources. In this paper, we describe the web interface and functions of Bio Portal in detail. Later we explain RSCC, and discuss performance evaluations of the distribution patterns for BLAST jobs. Finally, we propose bioinformatics job distribution patterns for high throughput processing.
Citation:
Hiroaki Yuasa, Takeshi Iwasaki, Motoyoshi Kurokawa, Takayuki Shigetani, Tsuyoshi Horiki, Ryutaro Himeno, "Development of User-friendly Supercomputing Portal in Bio Research Field," e-science, pp.508-515, First International Conference on e-Science and Grid Computing (e-Science'05), 2005
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