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A Computational Framework and Browser for Supporting Automatic Genome Annotation
Hunan, China October 21-October 23
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/GCCW.2006.3Fifth International Conference on Gri ...
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Feng Lu, Ji Zhang, Yanhong Zhou, "A Computational Framework and Browser for Supporting Automatic Genome Annotation," Grid and Cooperative Computing Workshops, International Conference on, pp. 389-396, Fifth International Conference on Grid and Cooperative Computing Workshops, 2006.
 
 
BibTex
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@article{ 10.1109/GCCW.2006.3,
author = {Feng Lu and Ji Zhang and Yanhong Zhou},
title = {A Computational Framework and Browser for Supporting Automatic Genome Annotation},
journal ={Grid and Cooperative Computing Workshops, International Conference on},
volume = {0},
year = {2006},
isbn = {0-7695-2695-0},
pages = {389-396},
doi = {http://doi.ieeecomputersociety.org/10.1109/GCCW.2006.3},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
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TY - CONF
JO - Grid and Cooperative Computing Workshops, International Conference on
TI - A Computational Framework and Browser for Supporting Automatic Genome Annotation
SN - 0-7695-2695-0
SP389
EP396
A1 - Feng Lu,
A1 - Ji Zhang,
A1 - Yanhong Zhou,
PY - 2006
KW - null
VL - 0
JA - Grid and Cooperative Computing Workshops, International Conference on
ER -
 
Feng Lu, Huazhong University of Science and Technology, China
Ji Zhang, Huazhong University of Science and Technology, China
Yanhong Zhou, Huazhong University of Science and Technology, China
We present here a flexible computational framework to complete the large-scale computing tasks involved in automatic annotation of whole-genomes. The characteristics of this framework include a two-level job load system and NFS-based distributed store of replicated data. In addition, the storage structure of annotation results in a relational database system and a web interface for graphical interactive browsing and searching on the data are also described. The framework has been used to identify a core set of human protein coding genes that are consistently annotated and of high quality, which can be accessed by the browser provided at http://bioinfo.hust.edu.cn/en/database/ben.
Citation:
Feng Lu, Ji Zhang, Yanhong Zhou, "A Computational Framework and Browser for Supporting Automatic Genome Annotation," gccw, pp.389-396, Fifth International Conference on Grid and Cooperative Computing Workshops, 2006
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