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Mining Shifting-and-Scaling Co-Regulation Patterns on Gene Expression Profiles
Atlanta, Georgia April 03-April 07
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/ICDE.2006.9822nd International Conference on Data ...
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Xin Xu, National University of Singapore
Ying Lu, University of Illinois, Urbana-Champaign
Anthony K. H. Tung, National University of Singapore
Wei Wang, U. of North Carolina, Chapel Hill
In this paper, we propose a new model for coherent clustering of gene expression data called reg-cluster. The proposed model allows (1) the expression profiles of genes in a cluster to follow any shifting-and-scaling patterns in subspace, where the scaling can be either positive or negative, and (2) the expression value changes across any two conditions of the cluster to be significant. No previous work measures up to the task that we have set: the density-based subspace clustering algorithms require genes to have similar expression levels to each other in subspace; the pattern-based biclustering algorithms only allow pure shifting or pure scaling patterns; and the tendency-based biclustering algorithms have no coherence guarantees. We also develop a novel patternbased biclustering algorithm for identifying shifting-andscaling co-regulation patterns, satisfying both coherence constraint and regulation constraint. Our experimental results show that the reg-cluster algorithm is able to detect a significant amount of clusters missed by previous models, and these clusters are potentially of high biological significance.
Citation:
Xin Xu, Ying Lu, Anthony K. H. Tung, Wei Wang, "Mining Shifting-and-Scaling Co-Regulation Patterns on Gene Expression Profiles," icde, pp.89, 22nd International Conference on Data Engineering (ICDE'06), 2006
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