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Promoter Recognition using dinucleotide Features : A Case Study for E.Coli
Bhubaneswar, India December 18-December 21
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/ICIT.2006.759th International Conference on Infor ...
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T.Sobha Rani, Univeristy of Hyderabad, India
S.Durga Bhavani, Univeristy of Hyderabad, India
Raju S. Bapi, Univeristy of Hyderabad, India
Promoter recognition is based upon two complementary methods, a motif based method and a global signal based method. The literature is abound with motif search methods. But as the motifs of a promoter are consensus patterns of very short length and the chance of finding putative promoters is high, global feature methods gain importance. In this paper a simple global feature extraction method is proposed for the recognition of sigma-70 promoters in E.coli. It is shown that a simple feed forward neural network classifier achieves a precision of nearly 80% in contrast to the high end classifiers and heavy features proposed in the literature achieving a similar performance. Additionally, a scheme is proposed for locating promoter regions in a given DNA segment.
Citation:
T.Sobha Rani, S.Durga Bhavani, Raju S. Bapi, "Promoter Recognition using dinucleotide Features : A Case Study for E.Coli," icit, pp.7-10, 9th International Conference on Information Technology (ICIT'06), 2006
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