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Visualization of Lattice-Based Protein Folding Simulations
London, England July 05-July 07
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/IV.2006.127Tenth International Conference on Inf ...
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Sebastian Potzsch, University of Leipzig
Gerik Scheuermann, University of Leipzig
Peter F. Stadler, University of Leipzig
Michael T. Wolfinger, University of Vienna
Christoph Flamm, University of Vienna
Analysis of the spatial structure of proteins including folding processes is a challenge for modern bioinformatics. Due to limited experimental access to folding processes, computer simulations are a standard approach. Since realistic continuous (all-atom) simulations are far too expensive, lattice based protein folding simulations are a common coarse-graining. In this paper, we present a visualization tool for lattice based protein folding simulations. The system is based on Shneiderman?s mantra "Overview first, zoom and filter, details on demand" and uses a collection of information visualization techniques including multiple views, focus+context and table lenses which have been tailored towards our data. We demonstrate the potential of information visualization techniques for providing insight into such simulations.
Index Terms:
Information visualization, multiple views, overview+detail, design guidelines, focus+context.
Citation:
Sebastian Potzsch, Gerik Scheuermann, Peter F. Stadler, Michael T. Wolfinger, Christoph Flamm, "Visualization of Lattice-Based Protein Folding Simulations," iv, pp.89-94, Tenth International Conference on Information Visualisation (IV'06), 2006
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