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Local Histograms for Design of Transfer Functions in Direct Volume Rendering
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/TVCG.2006.100November/December 2006 (vol. 12 no. 6) pp. 1570-1579
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Patric Ljung, IEEE Computer Society
Anders Ynnerman, IEEE Computer Society

Abstract—Direct Volume Rendering (DVR) is of increasing diagnostic value in the analysis of data sets captured using the latest medical imaging modalities. The deployment of DVR in everyday clinical work, however, has so far been limited. One contributing factor is that current Transfer Function (TF) models can encode only a small fraction of the user's domain knowledge. In this paper, we use histograms of local neighborhoods to capture tissue characteristics. This allows domain knowledge on spatial relations in the data set to be integrated into the TF. As a first example, we introduce Partial Range Histograms in an automatic tissue detection scheme and present its effectiveness in a clinical evaluation. We then use local histogram analysis to perform a classification where the tissue-type certainty is treated as a second TF dimension. The result is an enhanced rendering where tissues with overlapping intensity ranges can be discerned without requiring the user to explicitly define a complex, multidimensional TF.

[1] 1570 K.P. Andriole, “A Position Paper from the SCAR TRIP(tm) Sub-committee,” http://www.scarnet.org/pdfTRIPwhitepaper1103. pdf , Nov. 2003.
[2] C. Bajaj, V. Pascucci, and D.R. Schikore, “The Contour Spectrum,” Proc. IEEE Visualization Conf., pp. 167-173, 1997.
[3] T. He, L. Hong, A. Kaufman, and H. Pfister, “Generation of Transfer Functions with Stochastic Search Techniques,” Proc. IEEE Visualization Conf., pp. 227-234, 1996.
[4] F.-Y. Tzeng, E.B. Lum, and K.-L. Ma, “A Novel Interface for Higher-Dimensional Classification of Volume Data,” Proc. IEEE Visualization Conf., pp. 505-512, 2003.
[5] L.G. Nyúl and J.K. Udupa, “On Standardizing the MR Image Intensity Scale,” Magnetic Resonance in Medicine, vol. 42, pp. 1072-1081, 1999.
[6] R.A. Zoroofi, Y. Sato, T. Sasama, N. Sugano, K. Yonenobu, H. Yoshikawa, T. Ochi, and S. Tamura, “Automated Segmentation of Acetabulum and Femoral Head From 3-D CT Images,” IEEE Trans. Information Technology in Biomedicine, vol. 7, no. 4, pp. 329-343, Dec. 2003.
[7] M. Levoy, “Display of Surfaces from Volume Data,” IEEE Computer Graphics and Applications, vol. 8, no. 5, pp. 29-37, 1988.
[8] G. Kindlmann and J.W. Durkin, “Semi-Automatic Generation of Transfer Functions for Direct Volume Rendering,” Proc. IEEE Symp. Volume Visualization, pp. 79-86, 1998.
[9] Y. Sato, C.-F. Westin, A. Bhalerao, S. Nakajima, N. Shiraga, S. Tamura, and R. Kikinis, “Tissue Classification Based on 3D Local Intensity Structures for Volume Rendering,” IEEE Trans. Visualization and Computer Graphics, vol. 6, no. 2, pp.160-179, 2000.
[10] J. Hladuvka, A.H. König, and E.M. Gröller, “Curvature-Based Transfer Functions for Direct Volume Rendering,” Proc. Spring Conf. Computer Graphics, vol. 16, pp. 58-65, 2000.
[11] G. Kindlmann, R. Whitaker, T. Tasdizen, and T. Möller, “Curvature-Based Transfer Functions for Direct Volume Rendering: Methods and Applications,” Proc. IEEE Visualization Conf., pp.513-520, 2003.
[12] S. Roettger, M. Bauer, and M. Stamminger, “Spatialized Transfer Functions,” Proc. IEEE/EuroGraphics Symp. Visualization, pp.271-278, 2005.
[13] E.B. Lum and K.-L. Ma, “Lighting Transfer Functions Using Gradient Aligned Sampling,” Proc. IEEE Visualization Conf., pp.289-296, 2004.
[14] H. Pfister, C. Bajaj, W. Schroeder, and G. Kindlmann, “The Transfer Function Bake-Off,” Proc. IEEE Visualization Conf., pp.523-526, 2000.
[15] R.A. Drebin, L. Carpenter, and P. Hanrahan, “Volume Rendering,” Proc. ACM SIGGRAPH Conf., pp. 65-74, 1988.
[16] C. Lundström, P. Ljung, and A. Ynnerman, “Extending and Simplifying Transfer Function Design in Medical Volume Rendering Using Local Histograms,” Proc. IEEE/EuroGraphics Symp. Visualization, pp. 263-270, 2005.
[17] J.M. Kniss, R.V. Uitert, A. Stevens, G.-S. Li, T. Tasdizen, and C. Hansen, “Statistically Quantitative Volume Visualization,” Proc. IEEE Visualization Conf., pp. 287-294, 2005.
[18] S.M. Pizer, E.P. Amburn, J.D. Austin, R. Cromartie, A. Geselowitz, T. Greer, B.T. H. Romeny, and J.B. Zimmerman, “Adaptive Histogram Equalization and Its Variations,” Computer Vision, Graphics, and Image Processing, vol. 39, no. 3, pp. 355-368, 1987.
[19] D. Laidlaw, K. Fleischer, and A. Barr, “Partial-Volume Bayesian Classification of Material Mixtures in MR Volume Data Using Voxel Histograms,” IEEE Trans. Medical Imaging, vol. 17, no. 1, pp.74-86, 1998.
[20] P. Maragos and R.W. Shafer, “Morphological Systems for Multidimensional Signal Processing,” Proc. IEEE, vol. 78, no. 4, pp. 690-710, 1990.
[21] P. Ljung, C. Lundström, A. Ynnerman, and K. Museth, “Transfer Function Based Adaptive Decompression for Volume Rendering of Large Medical Data Sets,” Proc. IEEE Volume Visualization and Graphics Symp., pp. 25-32, 2004.
[22] A. Persson, T. Brismar, C. Lundström, N. Dahlström, F. Othberg, and Ö. Smedby, “Standardized Volume Rendering for MR Angiography Measurements in the Abdominal Aorta,” Acta Radiologica, vol. 47, no. 2, pp. 172-178, Mar. 2006.

Index Terms:
Volume visualization, transfer function, medical imaging, classification, partial range histogram.
Citation:
Claes Lundstr?, Patric Ljung, Anders Ynnerman, "Local Histograms for Design of Transfer Functions in Direct Volume Rendering," IEEE Transactions on Visualization and Computer Graphics, vol. 12, no. 6, pp. 1570-1579, Nov./Dec. 2006, doi:10.1109/TVCG.2006.100
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